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ID 47: Beta diversity [beta]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 52: Filter samples from table [filter_samples]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 62: Filter features from table [filter_features]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 91: Run k-nearest-neighbors on a labeled distance matrix. [classify_samples_from_dist]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 69: Convert (and merge) positive numeric metadata (in)to feature table. [metatable]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 66: Nested cross-validated supervised learning classifier. [classify_samples_ncv]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 68: Nested cross-validated supervised learning regressor. [regress_samples_ncv]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 90: Paired pairwise distance testing and boxplots [pairwise_distances]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 89: Compute first distances or distance from baseline between sequential states [first_distances]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 88: Filter samples from a distance matrix. [filter_distance_matrix]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 82: bioenv [bioenv]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 86: Beta diversity correlation [beta_correlation]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 83: Apply the Mantel test to two distance matrices [mantel]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 92: UMAP Embedding [embed]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 97: Filter features against reference [filter_features]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 96: Make a confusion matrix from sample classifier predictions. [confusion_matrix]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 61: Summarize table [summarize]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 58: Subsample table [subsample]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 59: Generate a heatmap representation of a feature table [heatmap]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 41: Visualize and Interact with Principal Coordinates Analysis Biplot [biplot]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 46: Core diversity metrics (phylogenetic and non-phylogenetic) [core_metrics_phylogenetic]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 56: Convert to relative frequencies [relative_frequency]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 57: Transpose a feature table. [transpose]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 70: Collapse features by their taxonomy at the specified level [collapse]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 40: Pre-fitted sklearn-based taxonomy classifier [classify_sklearn]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 42: Add pseudocount to table. [add_pseudocount]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 45: Alpha diversity [alpha]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 49: Core diversity metrics (non-phylogenetic) [core_metrics]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 55: Renames sample or feature ids in a table [rename_ids]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 79: Apply ANCOM to identify features that differ in abundance. [ancom]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 95: Alpha diversity comparisons [alpha_group_significance]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 87: adonis PERMANOVA test for beta group significance [adonis]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 85: Beta diversity group significance [beta_group_significance]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 81: Principal Coordinate Analysis [pcoa]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 93: Visualize and Interact with Principal Coordinates Analysis Plots [plot]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 74: Paired difference testing and boxplots [pairwise_differences]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 50: Beta diversity rarefaction [beta_rarefaction]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 53: Identify core features in table [core_features]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 64: Mislabelings within dataset [within_dataset]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 65: Remove features from table if they're not present in tree. [filter_table]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 44: Alpha diversity (phylogenetic) [alpha_phylogenetic]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 51: Filter features from a table based on abundance and prevalence [filter_features_conditionally]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 60: Convert to presence/absence [presence_absence]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 67: Split a feature table into training and testing sets. [split_table]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 98: Non V4 16S sequence assessment [non_v4_16s]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 71: Visualize taxonomy with an interactive bar plot [barplot]
|
-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 75: Linear mixed effects modeling [linear_mixed_effects]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 48: Alpha rarefaction curves [alpha_rarefaction]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 43: Beta diversity (phylogenetic) [beta_phylogenetic]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 54: Rarefy table [rarefy]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 72: Taxonomy-based feature table filter. [filter_table]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 76: Nonparametric microbial interdependence test [nmit]
|
-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 84: t-distributed stochastic neighbor embedding [tsne]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 73: Principal Coordinate Analysis Biplot [pcoa_biplot]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 94: Alpha diversity correlation [alpha_correlation]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 77: Compute first differences or difference from baseline between sequential states [first_differences]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 78: Generate interactive volatility plot [volatility]
|
-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 80: Uniform Manifold Approximation and Projection [umap]
|
-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
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ID 63: Mislabelings against dataset [against_dataset]
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-p qiita -N 1 -n 5 --mem-per-cpu 8gb --time 168:00:00 |
